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Report for CCDS34375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34375.1 Public Homo sapiens 6 TRIM10 24 110 108 CCDS HistoryNCBI Gene:10107Re-query CCDS DB by CCDS ID:34375.1Re-query CCDS DB by GeneID:10107See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34375.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449742.7 ENSP00000397073.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000449742.7Link to Ensembl Protein Viewer:ENSP00000397073.2Re-query CCDS DB by Nucleotide ID:ENST00000449742Re-query CCDS DB by Protein ID:ENSP00000397073
Original member Current member NCBI NM_006778.4 NP_006769.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006778.4Link to Protein Sequence:NP_006769.2Re-query CCDS DB by Nucleotide ID:NM_006778Re-query CCDS DB by Protein ID:NP_006769Link to BLAST:NP_006769.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006769.2 481 Q9UDY6-1 481 100% 0 0

Chromosomal Locations for CCDS 34375.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30153969 30154486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30155727 30155759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30156939 30157054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30157369 30157391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30158399 30158629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30159150 30159245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30160430 30160858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGCCTCTGCTGCCTCTGTGACCAGCCTGGCAGATGAAGTCAACTGCCCCATCTGTCAGGGTACCCTGA
GGGAGCCGGTCACTATCGACTGCGGCCACAACTTCTGCCGGGCCTGCCTTACCCGCTACTGTGAGATACC
AGGCCCAGACCTGGAGGAGTCCCCTACTTGCCCACTCTGCAAAGAACCCTTCCGTCCTGGGAGCTTCCGG
CCCAACTGGCAGCTGGCTAACGTGGTGGAGAACATTGAGCGCCTCCAGCTGGTGTCCACACTGGGTTTGG
GAGAGGAGGATGTCTGCCAAGAGCACGGAGAGAAGATCTACTTCTTCTGTGAGGATGATGAGATGCAGTT
GTGCGTGGTGTGCCGGGAGGCTGGGGAGCACGCTACCCACACCATGCGCTTCCTGGAGGATGCAGCGGCT
CCCTATAGGGAACAAATCCATAAGTGTCTTAAATGTCTAAGAAAAGAGAGAGAGGAGATTCAAGAAATCC
AGTCAAGAGAAAATAAAAGGATGCAAGTCCTCCTGACTCAGGTGTCCACCAAGAGACAACAGGTGATTTC
TGAGTTCGCACACCTGAGGAAGTTTCTAGAGGAACAGCAGAGCATCCTCTTAGCACAATTGGAGAGCCAG
GATGGGGACATCTTGAGGCAACGGGATGAATTTGATTTGCTGGTTGCTGGGGAGATCTGCCGGTTTAGTG
CTCTTATTGAAGAACTGGAGGAGAAGAATGAGAGGCCAGCAAGGGAGCTCCTGACGGACATCAGAAGCAC
TCTAATAAGATGTGAAACCAGAAAGTGCCGGAAACCGGTGGCTGTGTCGCCAGAGCTGGGCCAGAGGATT
CGGGACTTTCCCCAGCAGGCCCTCCCGCTGCAGAGGGAGATGAAGATGTTTCTGGAAAAACTATGCTTTG
AGTTGGACTATGAGCCAGCTCACATTTCTCTAGACCCTCAGACTTCCCACCCCAAGCTCCTCTTGTCCGA
GGACCACCAGCGAGCTCAGTTCTCCTACAAATGGCAGAACTCACCAGACAACCCCCAACGTTTTGACCGG
GCCACCTGTGTTCTGGCCCACACTGGCATCACAGGGGGGAGACACACGTGGGTGGTGAGTATAGACCTGG
CCCATGGGGGCAGCTGCACCGTGGGCGTGGTGAGCGAGGATGTGCAGCGGAAGGGGGAGCTTCGGCTGCG
GCCAGAGGAGGGGGTGTGGGCTGTGAGGCTGGCTTGGGGCTTCGTCTCGGCTCTGGGCTCCTTCCCCACA
CGGCTGACCCTGAAGGAGCAGCCCCGGCAGGTGAGGGTGTCTCTTGACTATGAGGTGGGCTGGGTGACCT
TCACCAACGCTGTCACCCGAGAGCCCATCTACACCTTCACTGCCTCCTTCACTAGGAAGGTCATTCCCTT
CTTTGGGCTCTGGGGCCGAGGGTCCAGTTTCTCCCTGAGCTCCTGA

Translation (481 aa):
MASAASVTSLADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCKEPFRPGSFR
PNWQLANVVENIERLQLVSTLGLGEEDVCQEHGEKIYFFCEDDEMQLCVVCREAGEHATHTMRFLEDAAA
PYREQIHKCLKCLRKEREEIQEIQSRENKRMQVLLTQVSTKRQQVISEFAHLRKFLEEQQSILLAQLESQ
DGDILRQRDEFDLLVAGEICRFSALIEELEEKNERPARELLTDIRSTLIRCETRKCRKPVAVSPELGQRI
RDFPQQALPLQREMKMFLEKLCFELDYEPAHISLDPQTSHPKLLLSEDHQRAQFSYKWQNSPDNPQRFDR
ATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKGELRLRPEEGVWAVRLAWGFVSALGSFPT
RLTLKEQPRQVRVSLDYEVGWVTFTNAVTREPIYTFTASFTRKVIPFFGLWGRGSSFSLSS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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